Subroutine Coverage
| blib/lib/Ace/Sequence.pm |
|
| Criterion |
Covered |
Total |
% |
| subroutine |
40 |
58 |
69.0
|
| pod |
19 |
34 |
55.9
|
| line |
count |
pod |
subroutine |
| 2 |
1 |
n/a |
BEGIN |
| 4 |
1 |
n/a |
BEGIN |
| 5 |
1 |
n/a |
BEGIN |
| 6 |
1 |
n/a |
BEGIN |
| 7 |
1 |
n/a |
BEGIN |
| 8 |
1 |
n/a |
BEGIN |
| 9 |
1 |
n/a |
BEGIN |
| 10 |
1 |
n/a |
BEGIN |
| 15 |
1 |
n/a |
BEGIN |
| 20 |
1 |
n/a |
BEGIN |
| 54 |
25 |
No |
new |
| 128 |
141 |
No |
source |
| 132 |
79 |
No |
parent |
| 137 |
6 |
Yes |
length |
| 142 |
0 |
Yes |
reversed |
| 145 |
10 |
Yes |
automerge |
| 153 |
1018 |
Yes |
refseq |
| 200 |
0 |
Yes |
strand |
| 204 |
134 |
No |
r_strand |
| 213 |
32 |
Yes |
offset |
| 214 |
0 |
No |
p_offset |
| 216 |
0 |
No |
smapped |
| 217 |
0 |
No |
type |
| 218 |
0 |
No |
subtype |
| 221 |
24 |
No |
debug |
| 229 |
284 |
Yes |
db |
| 233 |
425 |
Yes |
start |
| 250 |
106 |
Yes |
end |
| 265 |
1611 |
Yes |
absolute |
| 273 |
59 |
Yes |
asString |
| 286 |
3 |
No |
cmp |
| 298 |
12 |
Yes |
dna |
| 312 |
6 |
Yes |
gff |
| 329 |
0 |
Yes |
GFF |
| 346 |
5 |
Yes |
features |
| 377 |
1 |
Yes |
transcripts |
| 388 |
1 |
n/a |
_make_transcripts |
| 416 |
0 |
Yes |
clones |
| 424 |
0 |
n/a |
_make_clones |
| 472 |
0 |
No |
alignments |
| 480 |
0 |
No |
segments |
| 485 |
0 |
n/a |
_make_alignments |
| 504 |
0 |
Yes |
feature_list |
| 512 |
6 |
No |
transformGFF |
| 542 |
0 |
Yes |
name |
| 547 |
0 |
No |
info |
| 555 |
27 |
No |
find_parent |
| 571 |
0 |
n/a |
_get_parent |
| 582 |
0 |
n/a |
_get_children |
| 590 |
11 |
n/a |
_traverse |
| 609 |
11 |
n/a |
_get_toplevel |
| 624 |
5 |
n/a |
_make_filter |
| 668 |
0 |
n/a |
__ANON__ |
| 675 |
5 |
n/a |
_make_features |
| 693 |
6 |
n/a |
_gff |
| 702 |
18 |
n/a |
_query |
| 726 |
8 |
n/a |
_complement |
| 732 |
6 |
n/a |
_feature_filter |